Hi, I'm Leo Joseph
Passionate about applying machine learning to solve complex biological problems. Currently developing computational tools for microbiome studies at Knight Lab, UCSD.
When I'm not a student, I like to drink coffee, take photos, and pursue athletic endeavors.
Check out my work
Here are some of the projects I've worked on during my time at UCSD.
Qupid - Microbiome Analysis Tool
A software tool for case-control matching in microbiome studies.
KnightGPT
A microbiome specific Graph-Retrieval Augmented Generation system that enhances language models.
HRD Detection Algorithm
Machine learning algorithm to detect Homologous Recombination Deficiency from RNA-seq data of breast and ovarian cancer data.
IDEA (Interactive Differential Expression Analysis)
Python package designed for performing differential expression analysis on gene expression data. (Designed as a Python equivalent to DESeq2)
Skywalker V2 Prosthetic Arm
A low-cost prosthetic arm with EMG signal processing and machine learning-driven motion control.
Technologies I work with
I'm proficient in a variety of programming languages and tools used in bioinformatics and software development.
Programming Languages
Machine Learning
Web Technologies
Bioinformatics Tools
Cloud Platforms
Version Control
Educational & Professional Background
I'm a bioinformatics-focused developer currently studying at the University of California, San Diego (UCSD). I'm pursuing a Bachelor's degree in Bioengineering: Bioinformatics, expected to graduate in June 2025.
My experience spans from academic research to industry internships. At the Knight Lab at UCSD, I've been working on microbiome studies. I primarily focus on Autism Spectrum Disorder (ASD), using advanced machine learning and bioinformatics techniques to identify and diagnose ASD using the gut microbiome.
University of California, San Diego
Bachelor of Science in Bioengineering: Bioinformatics
Expected Graduation: June 2025
Relevant Experience
- Knight Lab - UCSD (Dec 2023 - Present)
- Kaiser Permanente Intern (Jun 2023 - Sep 2023)
- Clear Labs R&D Intern (Jun 2021 - Aug 2021)
- Cisco Software Engineer Intern (Jun 2021 - Aug 2021)
Relevant Coursework
- Design & Analysis of Algorithms
- Applied Genomic Technologies
- Advanced Bioinformatics Lab
- Supervised Machine Learning Algorithms